Title
Circulating SARS-CoV-2 spike N439K variants maintain fitness while evading antibody-mediated immunity
Date Issued
04 March 2021
Access level
open access
Resource Type
research article
Author(s)
Thomson E.C.
Thomson E.C.
Rosen L.E.
Shepherd J.G.
Spreafico R.
da Silva Filipe A.
Wojcechowskyj J.A.
Davis C.
Piccoli L.
Pascall D.J.
Dillen J.
Lytras S.
Czudnochowski N.
Shah R.
Meury M.
Jesudason N.
De Marco A.
Li K.
Bassi J.
O’Toole A.
Pinto D.
Colquhoun R.M.
Culap K.
Jackson B.
Zatta F.
Rambaut A.
Jaconi S.
Sreenu V.B.
Nix J.
Zhang I.
Zhang I.
Jarrett R.F.
Glass W.G.
Beltramello M.
Nomikou K.
Pizzuto M.
Tong L.
Cameroni E.
Croll T.I.
Johnson N.
Iulio J.D.
Wickenhagen A.
Ceschi A.
Ceschi A.
Ceschi A.
Harbison A.M.
Mair D.
Ferrari P.
Ferrari P.
Smollett K.
Sallusto F.
Sallusto F.
Carmichael S.
Garzoni C.
Nichols J.
Galli M.
Hughes J.
Riva A.
Ho A.
Schiuma M.
Semple M.G.
Semple M.G.
Openshaw P.J.M.
Fadda E.
Kenneth Baillie J.
Kenneth Baillie J.
Chodera J.D.
Rihn S.J.
Lycett S.J.
Virgin H.W.
Virgin H.W.
Telenti A.
Corti D.
Robertson D.L.
Snell G.
Connor T.R.
Loman N.J.
Robson S.C.
Golubchik T.
Estee Torok M.
Hamilton W.L.
Bonsall D.
Awan A.R.
Corden S.
Goodfellow I.
Smith D.L.
Curran M.D.
Parmar S.
Shepherd J.G.
Parker M.D.
Moore C.
Fairley D.J.
Loose M.W.
Watkins J.
Bull M.
Nicholls S.
Aanensen D.M.
Glaysher S.
Bashton M.
Pacchiarini N.
Underwood A.P.
de Silva T.I.
Wang D.
Andersson M.
Chauhan A.J.
de Cesare M.
Ludden C.
Mahungu T.W.
Dewar R.
MRC-University of Glasgow Centre for Virus Research
London School of Hygiene & Tropical Medicine
Vir Biotechnology, Inc.
MRC-University of Glasgow Centre for Virus Research
Vir Biotechnology, Inc.
MRC-University of Glasgow Centre for Virus Research
Vir Biotechnology, Inc.
MRC-University of Glasgow Centre for Virus Research
Vir Biotechnology, Inc.
College of Medical, Veterinary & Life Sciences
Vir Biotechnology, Inc.
MRC-University of Glasgow Centre for Virus Research
Vir Biotechnology, Inc.
MRC-University of Glasgow Centre for Virus Research
Vir Biotechnology, Inc.
MRC-University of Glasgow Centre for Virus Research
Vir Biotechnology, Inc.
MRC-University of Glasgow Centre for Virus Research
Vir Biotechnology, Inc.
The University of Edinburgh
Vir Biotechnology, Inc.
The University of Edinburgh
Vir Biotechnology, Inc.
The University of Edinburgh
Vir Biotechnology, Inc.
The University of Edinburgh
Vir Biotechnology, Inc.
MRC-University of Glasgow Centre for Virus Research
Advanced Light Source, Berkeley
Memorial Sloan-Kettering Cancer Center
Weill Cornell Graduate School of Medical Sciences
MRC-University of Glasgow Centre for Virus Research
Memorial Sloan-Kettering Cancer Center
Vir Biotechnology, Inc.
MRC-University of Glasgow Centre for Virus Research
Vir Biotechnology, Inc.
MRC-University of Glasgow Centre for Virus Research
Vir Biotechnology, Inc.
Cambridge Institute for Medical Research
MRC-University of Glasgow Centre for Virus Research
Vir Biotechnology, Inc.
MRC-University of Glasgow Centre for Virus Research
Università della Svizzera italiana
Ente Ospedaliero Cantonale
UniversitatsSpital Zurich
Maynooth University
MRC-University of Glasgow Centre for Virus Research
Ospedale Civico, Lugano
UNSW Medicine
MRC-University of Glasgow Centre for Virus Research
Istituto di Ricerca in Biomedicina, Bellinzona
ETH Zürich
MRC-University of Glasgow Centre for Virus Research
Clinica Luganese Moncucco
MRC-University of Glasgow Centre for Virus Research
Ospedale Luigi Sacco - Polo Universitario
MRC-University of Glasgow Centre for Virus Research
Ospedale Luigi Sacco - Polo Universitario
MRC-University of Glasgow Centre for Virus Research
Ospedale Luigi Sacco - Polo Universitario
University of Liverpool
Alder Hey Children's Hospital
National Heart and Lung Institute
Maynooth University
University of Edinburgh, Roslin Institute
Royal Infirmary of Edinburgh
Memorial Sloan-Kettering Cancer Center
MRC-University of Glasgow Centre for Virus Research
University of Edinburgh, Roslin Institute
Vir Biotechnology, Inc.
Washington University School of Medicine in St. Louis
Vir Biotechnology, Inc.
Vir Biotechnology, Inc.
MRC-University of Glasgow Centre for Virus Research
Vir Biotechnology, Inc.
MRC-University of Glasgow Centre for Virus Research
Abstract
SARS-CoV-2 can mutate and evade immunity, with consequences for efficacy of emerging vaccines and antibody therapeutics. Here, we demonstrate that the immunodominant SARS-CoV-2 spike (S) receptor binding motif (RBM) is a highly variable region of S and provide epidemiological, clinical, and molecular characterization of a prevalent, sentinel RBM mutation, N439K. We demonstrate N439K S protein has enhanced binding affinity to the hACE2 receptor, and N439K viruses have similar in vitro replication fitness and cause infections with similar clinical outcomes as compared to wild type. We show the N439K mutation confers resistance against several neutralizing monoclonal antibodies, including one authorized for emergency use by the US Food and Drug Administration (FDA), and reduces the activity of some polyclonal sera from persons recovered from infection. Immune evasion mutations that maintain virulence and fitness such as N439K can emerge within SARS-CoV-2 S, highlighting the need for ongoing molecular surveillance to guide development and usage of vaccines and therapeutics. Epidemiological, clinical, molecular, and structural characterization of the N439K mutation in the SARS-CoV-2 spike receptor binding motif demonstrates that it results in similar viral fitness compared to wild-type while conferring resistance against some neutralizing monoclonal antibodies and reducing the activity of some polyclonal antibody responses.
Start page
1171
End page
1187.e20
Volume
184
Issue
5
Subjects
Scopus EID
2-s2.0-85100498920
Source
Cell
ISSN of the container
10974172
Sources of information:
Scopus
Directorio de Producción Científica